Through games of Nov. 26, 2006:
| # | Team | W-L | Pts. | Last Week |
| 1 | Bowdoin (13) | 4-0 | 605 | 2 |
| 2 | Hope (9) | 2-0 | 600 | 4 |
| 3 | Southern Maine (1) | 3-0 | 558 | 6 |
| 4 | Rochester (2) | 4-0 | 508 | 14 |
| 5 | Scranton | 2-1 | 503 | 1 |
| 6 | UW-Stout | 5-0 | 472 | 11 |
| 7 | DePauw | 4-1 | 442 | 3 |
| 8 | Brandeis | 4-0 | 388 | 15 |
| 9 | Calvin | 3-0 | 386 | 13 |
| 10 | Baldwin-Wallace | 2-1 | 357 | 9 |
| 11 | Hardin-Simmons | 2-1 | 315 | 7 |
| 12 | Mary Washington | 2-1 | 310 | 8 |
| 13 | Messiah | 2-1 | 291 | 10 |
| 14 | Howard Payne | 2-0 | 284 | 18 |
| 15 | McMurry | 3-0 | 251 | 20 |
| 16 | UW-Stevens Point | 5-0 | 229 | — |
| 17 | Puget Sound | 3-0 | 197 | 25 |
| 18 | Lake Forest | 4-0 | 178 | — |
| 19 | Salem State | 3-0 | 143 | — |
| 20 | Simpson | 4-0 | 143 | — |
| 21 | Bridgewater (Va.) | 1-0 | 139 | 21 |
| 22 | Randolph-Macon | 2-0 | 120 | — |
| 23 | Wilmington | 4-0 | 113 | — |
| 24 | Maryville (Tenn.) | 4-0 | 88 | — |
| 25 | Chicago | 4-0 | 72 | — |
Others receiving votes: Illinois Wesleyan 63, Wheaton (Ill.) 62, Pacific Lutheran 61, New York University 43, Bates 42, Medaille 31, Emory 27, Williams 17, Washington U. 13, Muhlenberg 12, Southwestern 10, Virginia Wesleyan 10, Emmanuel 9, UW-La Crosse 7, Washington and Jefferson 6, Moravian 3, Carroll 2, King's 1.
The D3hoops.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly.