Emory (13-8 overall, 5-6 UAA) never trailed in the contest. The Eagles built a 29-24 halftime lead then outscored Chicago (10-12, 6-5) 12-1 during the first 3:34 of the second stanza.
Emory, which shot 50% from the field and was 8-of-11 from three-point range, took its largest lead of the day, 70-52, at the 5:49 mark.
Jeff Hall and Spiros Ferderigos finished with 17 and 12 points, respectively, for Emory. Hall hit four of five three-point attempts.
Justin Waldie led three Maroons in double digits with 18 points.
Brandon Woodhead added 17 points, while Jesse Meyer contributed 12.
Woodhead was perfect on six free throw attempts to raise his season percentage to 91.2% (52-of-57).
Meyer was 4-for-9 from three-point range two days after tying a school record with eight three-point field goals against Case Western Reserve University.
The loss snapped Chicago's three-game winning streak.